Supplementary Table 10. Differentially Expressed Genes, Zymo RF
(Sarstedt-Minivette untreated/Zymo Quick-RNA Whole Blood RF) Male vs. Female |
gene |
baseMean |
log2FoldChange |
lfcSE |
pvalue |
padj |
hgnc_symbol |
chromosome_name |
start_position |
end_position |
strand |
description |
ENSG00000229807 |
1798.556907 |
-12.42207252 |
0.380547982 |
2.60E-255 |
3.50E-251 |
XIST |
X |
73820649 |
73852723 |
-1 |
X inactive specific transcript [Source:HGNC
Symbol;Acc:HGNC:12810] |
ENSG00000198692 |
2298.033187 |
14.11471635 |
0.606564183 |
2.59E-197 |
1.74E-193 |
EIF1AY |
Y |
20575776 |
20593154 |
1 |
eukaryotic
translation initiation factor 1A Y-linked [Source:HGNC Symbol;Acc:HGNC:3252] |
ENSG00000183878 |
984.8629973 |
15.30451949 |
1.321100024 |
1.15E-181 |
5.17E-178 |
UTY |
Y |
13234577 |
13480673 |
-1 |
ubiquitously transcribed tetratricopeptide repeat
containing |
ENSG00000067048 |
987.441078 |
13.50300336 |
0.70637584 |
2.83E-177 |
9.51E-174 |
DDX3Y |
Y |
12904108 |
12920478 |
1 |
DEAD-box helicase 3
Y-linked [Source:HGNC Symbol;Acc:HGNC:2699] |
ENSG00000129824 |
407.1255476 |
14.01581163 |
1.316545424 |
2.06E-147 |
5.53E-144 |
RPS4Y1 |
Y |
2841602 |
2932000 |
1 |
ribosomal protein S4 Y-linked 1 [Source:HGNC
Symbol;Acc:HGNC:10425] |
ENSG00000114374 |
466.3892555 |
12.79404661 |
0.80852181 |
7.64E-146 |
1.71E-142 |
USP9Y |
Y |
12537650 |
12860839 |
1 |
ubiquitin specific
peptidase 9 Y-linked [Source:HGNC Symbol;Acc:HGNC:12633] |
ENSG00000012817 |
418.9423394 |
13.18664561 |
0.973009726 |
4.81E-145 |
9.25E-142 |
KDM5D |
Y |
19703865 |
19744939 |
-1 |
lysine demethylase 5D [Source:HGNC
Symbol;Acc:HGNC:11115] |
ENSG00000291033 |
369.1759765 |
16.32945822 |
3.136549051 |
1.06E-141 |
1.79E-138 |
0 |
Y |
19567313 |
19606274 |
1 |
taxilin gamma
pseudogene |
ENSG00000067646 |
331.0972668 |
11.59510106 |
0.634761576 |
7.96E-137 |
1.19E-133 |
ZFY |
Y |
2935281 |
2982506 |
1 |
zinc finger protein Y-linked [Source:HGNC
Symbol;Acc:HGNC:12870] |
ENSG00000231535 |
289.7848389 |
13.51162901 |
1.31497349 |
7.35E-134 |
9.89E-131 |
LINC00278 |
Y |
3002887 |
3200509 |
1 |
long intergenic
non-protein coding RNA 278 [Source:HGNC Symbol;Acc:HGNC:38712] |
ENSG00000099725 |
111.6346719 |
9.215525541 |
0.480853848 |
5.81E-110 |
7.11E-107 |
PRKY |
Y |
7273972 |
7381548 |
1 |
protein kinase Y-linked (pseudogene) [Source:HGNC
Symbol;Acc:HGNC:9444] |
ENSG00000289707 |
156.7890536 |
15.16682965 |
3.249319488 |
8.12E-109 |
9.10E-106 |
0 |
Y |
21138633 |
21257832 |
1 |
novel transcript |
ENSG00000229236 |
52.60174148 |
9.619027579 |
0.804880545 |
1.86E-78 |
1.93E-75 |
TTTY10 |
Y |
20464916 |
20575519 |
-1 |
testis-specific transcript |
ENSG00000176728 |
29.16432962 |
12.4677409 |
3.0110824 |
6.28E-69 |
6.03E-66 |
TTTY14 |
Y |
18772706 |
19077416 |
-1 |
testis-specific
transcript |
ENSG00000154620 |
18.06835947 |
11.68984788 |
2.94387896 |
9.34E-56 |
8.38E-53 |
TMSB4Y |
Y |
13703899 |
13706024 |
1 |
thymosin beta 4 Y-linked [Source:HGNC
Symbol;Acc:HGNC:11882] |
ENSG00000173674 |
537.3795461 |
-0.605624539 |
0.054226974 |
4.79E-30 |
3.80E-27 |
EIF1AX |
X |
20124525 |
20141838 |
-1 |
eukaryotic
translation initiation factor 1A X-linked [Source:HGNC Symbol;Acc:HGNC:3250] |
ENSG00000183943 |
603.1285444 |
-0.620913827 |
0.059457145 |
1.18E-26 |
8.65E-24 |
PRKX |
X |
3604340 |
3713649 |
-1 |
protein kinase cAMP-dependent X-linked catalytic
subunit [Source:HGNC Symbol;Acc:HGNC:9441] |
ENSG00000147050 |
977.7260787 |
-0.606857409 |
0.067955056 |
2.64E-20 |
1.78E-17 |
KDM6A |
X |
44873188 |
45112779 |
1 |
lysine demethylase 6A
[Source:HGNC Symbol;Acc:HGNC:12637] |
ENSG00000130021 |
86.63334148 |
-0.680791981 |
0.078066448 |
1.38E-19 |
8.46E-17 |
PUDP |
X |
6667865 |
7148158 |
-1 |
pseudouridine 5'-phosphatase [Source:HGNC
Symbol;Acc:HGNC:16818] |
ENSG00000225470 |
469.1423096 |
-0.612396976 |
0.083404387 |
1.28E-14 |
7.19E-12 |
JPX |
X |
73944182 |
74070408 |
1 |
JPX transcript |
ENSG00000006757 |
32.86566611 |
-0.599494244 |
0.10758479 |
1.49E-09 |
7.18E-07 |
PNPLA4 |
X |
7898247 |
7927739 |
-1 |
patatin like phospholipase domain containing 4
[Source:HGNC Symbol;Acc:HGNC:24887] |
ENSG00000013561 |
3326.897789 |
0.773318244 |
0.173608792 |
5.42E-07 |
0.000165839 |
RNF14 |
5 |
141958328 |
141990292 |
1 |
ring finger protein
14 [Source:HGNC Symbol;Acc:HGNC:10058] |
ENSG00000171840 |
588.2608747 |
0.66862567 |
0.166613675 |
3.11E-06 |
0.000774506 |
NINJ2 |
12 |
564296 |
663589 |
-1 |
ninjurin 2 [Source:HGNC Symbol;Acc:HGNC:7825] |
ENSG00000080854 |
34.8654117 |
-0.748623634 |
0.208446008 |
1.24E-05 |
0.002262164 |
IGSF9B |
11 |
133896438 |
133956968 |
-1 |
immunoglobulin
superfamily member 9B [Source:HGNC Symbol;Acc:HGNC:32326] |
ENSG00000181523 |
64.68785523 |
-0.683946489 |
0.189712024 |
1.24E-05 |
0.002262164 |
SGSH |
17 |
80206716 |
80220923 |
-1 |
N-sulfoglucosamine sulfohydrolase [Source:HGNC
Symbol;Acc:HGNC:10818] |
ENSG00000105371 |
87.41668801 |
0.617096708 |
0.170478444 |
1.33E-05 |
0.00232663 |
ICAM4 |
19 |
10286955 |
10288522 |
1 |
intercellular
adhesion molecule 4 (Landsteiner-Wiener blood group) [Source:HGNC
Symbol;Acc:HGNC:5347] |
ENSG00000140403 |
1169.3132 |
0.742414313 |
0.203793856 |
1.43E-05 |
0.002407372 |
DNAJA4 |
15 |
78264086 |
78282196 |
1 |
DnaJ heat shock protein family (Hsp40) member A4
[Source:HGNC Symbol;Acc:HGNC:14885] |
ENSG00000084764 |
17.82453028 |
-0.656524829 |
0.185407486 |
1.47E-05 |
0.002443202 |
MAPRE3 |
2 |
26970637 |
27027219 |
1 |
microtubule
associated protein RP/EB family member 3 [Source:HGNC Symbol;Acc:HGNC:6892] |
ENSG00000164142 |
20.10269406 |
-0.667964717 |
0.188309835 |
1.71E-05 |
0.002675329 |
FHIP1A |
4 |
151409176 |
151670503 |
1 |
FHF complex subunit HOOK interacting protein 1A
[Source:HGNC Symbol;Acc:HGNC:34237] |
ENSG00000005486 |
67.29358336 |
-0.612751659 |
0.174797482 |
1.85E-05 |
0.002834753 |
RHBDD2 |
7 |
75842602 |
75888926 |
1 |
rhomboid domain
containing 2 [Source:HGNC Symbol;Acc:HGNC:23082] |
ENSG00000114737 |
140.6494493 |
-0.675797549 |
0.193826337 |
1.99E-05 |
0.002903967 |
CISH |
3 |
50606489 |
50611774 |
-1 |
cytokine inducible SH2 containing protein
[Source:HGNC Symbol;Acc:HGNC:1984] |
ENSG00000115568 |
95.43970875 |
-0.603736603 |
0.172292715 |
2.01E-05 |
0.002903967 |
ZNF142 |
2 |
218633329 |
218659655 |
-1 |
zinc finger protein
142 [Source:HGNC Symbol;Acc:HGNC:12927] |
ENSG00000008517 |
199.145001 |
-0.634383499 |
0.181726376 |
2.13E-05 |
0.00295965 |
IL32 |
16 |
3065297 |
3082192 |
1 |
interleukin 32 [Source:HGNC Symbol;Acc:HGNC:16830] |
ENSG00000258476 |
151.349431 |
0.826268705 |
0.237371939 |
2.18E-05 |
0.002990352 |
LINC02207 |
15 |
93835490 |
93878822 |
1 |
long intergenic
non-protein coding RNA 2207 [Source:HGNC Symbol;Acc:HGNC:53073] |
ENSG00000080845 |
56.89248005 |
-0.778125042 |
0.227609931 |
2.27E-05 |
0.003058289 |
DLGAP4 |
20 |
36306336 |
36528637 |
1 |
DLG associated protein 4 [Source:HGNC
Symbol;Acc:HGNC:24476] |
ENSG00000251441 |
36.52635745 |
-0.697528449 |
0.204274903 |
2.38E-05 |
0.003153724 |
RTEL1P1 |
4 |
112356135 |
112370959 |
1 |
regulator of telomere
elongation helicase 1 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:44213] |
ENSG00000100225 |
45229.5034 |
0.594746333 |
0.176517648 |
2.97E-05 |
0.003697678 |
FBXO7 |
22 |
32474676 |
32498829 |
1 |
F-box protein 7 [Source:HGNC Symbol;Acc:HGNC:13586] |
ENSG00000081059 |
393.4922881 |
-0.603840946 |
0.183897938 |
4.63E-05 |
0.004753105 |
TCF7 |
5 |
134114681 |
134151865 |
1 |
transcription factor
7 [Source:HGNC Symbol;Acc:HGNC:11639] |
ENSG00000107262 |
7264.888269 |
0.617752315 |
0.185478223 |
4.71E-05 |
0.004802063 |
BAG1 |
9 |
33247820 |
33264720 |
-1 |
BAG cochaperone 1 [Source:HGNC Symbol;Acc:HGNC:937] |
ENSG00000100346 |
50.66564943 |
-0.643806158 |
0.218009173 |
0.000116541 |
0.008432903 |
CACNA1I |
22 |
39570753 |
39689735 |
1 |
calcium voltage-gated
channel subunit alpha1 I [Source:HGNC Symbol;Acc:HGNC:1396] |
ENSG00000178297 |
97.24170463 |
0.844741002 |
0.286092742 |
0.000115956 |
0.008432903 |
TMPRSS9 |
19 |
2360238 |
2426261 |
1 |
transmembrane serine protease 9 [Source:HGNC
Symbol;Acc:HGNC:30079] |
ENSG00000022556 |
29.0097913 |
-0.821646678 |
0.281758723 |
0.000128952 |
0.008854893 |
NLRP2 |
19 |
54953130 |
55001142 |
1 |
NLR family pyrin
domain containing 2 [Source:HGNC Symbol;Acc:HGNC:22948] |
ENSG00000089327 |
221.1323839 |
-0.621264272 |
0.212372322 |
0.000134909 |
0.009124354 |
FXYD5 |
19 |
35154730 |
35169881 |
1 |
FXYD domain containing ion transport regulator 5
[Source:HGNC Symbol;Acc:HGNC:4029] |
ENSG00000204209 |
76.75450888 |
-0.642517142 |
0.222404716 |
0.000147733 |
0.009423427 |
DAXX |
6 |
33318558 |
33323016 |
-1 |
death domain
associated protein [Source:HGNC Symbol;Acc:HGNC:2681] |
ENSG00000143365 |
29.34536501 |
-0.602832414 |
0.206906317 |
0.000152134 |
0.009658386 |
RORC |
1 |
151806071 |
151831845 |
-1 |
RAR related orphan receptor C [Source:HGNC
Symbol;Acc:HGNC:10260] |
ENSG00000261801 |
16.20998199 |
-0.615773749 |
0.216838355 |
0.000192733 |
0.010945125 |
LOXL1-AS1 |
15 |
73908071 |
73928248 |
-1 |
LOXL1 antisense RNA 1
[Source:HGNC Symbol;Acc:HGNC:44169] |
ENSG00000173511 |
16.75539264 |
-0.750695006 |
0.283258481 |
0.000239539 |
0.01229721 |
VEGFB |
11 |
64234584 |
64239264 |
1 |
vascular endothelial growth factor B [Source:HGNC
Symbol;Acc:HGNC:12681] |
ENSG00000267750 |
43.37694654 |
0.624913077 |
0.22738718 |
0.000238674 |
0.01229721 |
RUNDC3A-AS1 |
17 |
44299574 |
44315315 |
-1 |
RUNDC3A antisense RNA
1 [Source:HGNC Symbol;Acc:HGNC:51344] |
ENSG00000126464 |
45.61421816 |
-0.766715683 |
0.291639387 |
0.000258036 |
0.012628758 |
PRR12 |
19 |
49591182 |
49626439 |
1 |
proline rich 12 [Source:HGNC Symbol;Acc:HGNC:29217] |
ENSG00000198851 |
192.4199896 |
-0.589254757 |
0.219242565 |
0.00027674 |
0.013114927 |
CD3E |
11 |
118304730 |
118316175 |
1 |
CD3 epsilon subunit
of T-cell receptor complex [Source:HGNC Symbol;Acc:HGNC:1674] |
ENSG00000289546 |
239.4014319 |
-0.924092392 |
0.350633647 |
0.000282908 |
0.0131449 |
0 |
21 |
43884395 |
43889795 |
1 |
novel transcript |
ENSG00000197283 |
36.34629224 |
-0.584711554 |
0.22315974 |
0.000302406 |
0.013376341 |
SYNGAP1 |
6 |
33419661 |
33453689 |
1 |
synaptic Ras GTPase
activating protein 1 [Source:HGNC Symbol;Acc:HGNC:11497] |
ENSG00000244021 |
24.22908612 |
0.589868015 |
0.22088346 |
0.000307293 |
0.013384633 |
RPL21P53 |
4 |
127812720 |
127813200 |
-1 |
ribosomal protein L21 pseudogene 53 [Source:HGNC
Symbol;Acc:HGNC:36574] |
ENSG00000082146 |
23160.46353 |
0.581273932 |
0.209390176 |
0.00032245 |
0.0137773 |
STRADB |
2 |
201387858 |
201480846 |
1 |
STE20 related adaptor
beta [Source:HGNC Symbol;Acc:HGNC:13205] |
ENSG00000140986 |
21.13606867 |
1.634256978 |
0.645976911 |
0.000349174 |
0.014493032 |
RPL3L |
16 |
1943974 |
1957606 |
-1 |
ribosomal protein L3 like [Source:HGNC
Symbol;Acc:HGNC:10351] |
ENSG00000167106 |
129.6047506 |
-0.589172533 |
0.228100309 |
0.000362495 |
0.01482923 |
EEIG1 |
9 |
127940582 |
127980989 |
-1 |
estrogen-induced
osteoclastogenesis regulator 1 [Source:HGNC Symbol;Acc:HGNC:31419] |
ENSG00000231513 |
23.14862674 |
0.652298634 |
0.253534597 |
0.000414496 |
0.015898514 |
E2F6P4 |
X |
136097835 |
136098348 |
-1 |
E2F transcription factor 6 pseudogene 4
[Source:HGNC Symbol;Acc:HGNC:51452] |
ENSG00000065989 |
15.60465001 |
-0.632638297 |
0.258959654 |
0.000486778 |
0.017659156 |
PDE4A |
19 |
10416773 |
10469630 |
1 |
phosphodiesterase 4A
[Source:HGNC Symbol;Acc:HGNC:8780] |
ENSG00000135845 |
2956.110139 |
0.924095327 |
0.377353822 |
0.000488499 |
0.01766176 |
PIGC |
1 |
172370189 |
172444086 |
-1 |
phosphatidylinositol glycan anchor biosynthesis
class C [Source:HGNC Symbol;Acc:HGNC:8960] |
ENSG00000135451 |
135.4583542 |
0.584762616 |
0.234710859 |
0.000502933 |
0.017717575 |
TROAP |
12 |
49323236 |
49331731 |
1 |
trophinin associated
protein [Source:HGNC Symbol;Acc:HGNC:12327] |
ENSG00000267769 |
21.39411175 |
1.006557754 |
0.415431998 |
0.000499679 |
0.017717575 |
0 |
19 |
4454014 |
4455286 |
1 |
novel transcript |
ENSG00000167476 |
19.84883089 |
1.144319301 |
0.497342258 |
0.000576 |
0.019189075 |
JSRP1 |
19 |
2252252 |
2269759 |
-1 |
junctional
sarcoplasmic reticulum protein 1 [Source:HGNC Symbol;Acc:HGNC:24963] |
ENSG00000281376 |
36.61330226 |
1.2848508 |
0.558910741 |
0.00058872 |
0.019468275 |
ABALON |
20 |
31721507 |
31723409 |
1 |
apoptotic BCL2L1-antisense long non-coding RNA
[Source:HGNC Symbol;Acc:HGNC:49667] |
ENSG00000160307 |
27.70597728 |
1.121058893 |
0.496494383 |
0.000646181 |
0.020387729 |
S100B |
21 |
46598604 |
46605208 |
-1 |
S100 calcium binding
protein B [Source:HGNC Symbol;Acc:HGNC:10500] |
ENSG00000173391 |
22.55398204 |
0.869516156 |
0.378804632 |
0.000675208 |
0.020843174 |
OLR1 |
12 |
10158301 |
10172138 |
-1 |
oxidized low density lipoprotein receptor 1
[Source:HGNC Symbol;Acc:HGNC:8133] |
ENSG00000100448 |
26.55584609 |
1.117124903 |
0.517495021 |
0.00081223 |
0.022965961 |
CTSG |
14 |
24573518 |
24576250 |
-1 |
cathepsin G
[Source:HGNC Symbol;Acc:HGNC:2532] |
ENSG00000251095 |
45.15331172 |
1.550281094 |
0.745702248 |
0.000895439 |
0.024200223 |
0 |
4 |
89410960 |
89726752 |
1 |
novel transcript |
ENSG00000201592 |
16.18068678 |
-0.601975471 |
0.285405821 |
0.000996365 |
0.025446068 |
0 |
X |
20136306 |
20136385 |
-1 |
0 |
ENSG00000124469 |
106.7525055 |
0.712459271 |
0.359285945 |
0.001345128 |
0.029342111 |
CEACAM8 |
19 |
42580243 |
42595055 |
-1 |
CEA cell adhesion molecule 8 [Source:HGNC
Symbol;Acc:HGNC:1820] |
ENSG00000077935 |
15.73534372 |
0.602886798 |
0.297983048 |
0.00141966 |
0.030010531 |
SMC1B |
22 |
45344063 |
45413619 |
-1 |
structural
maintenance of chromosomes 1B [Source:HGNC Symbol;Acc:HGNC:11112] |
ENSG00000277586 |
35.18182272 |
-0.68786323 |
0.353349719 |
0.001510497 |
0.030896325 |
NEFL |
8 |
24950955 |
24956721 |
-1 |
neurofilament light chain [Source:HGNC
Symbol;Acc:HGNC:7739] |
ENSG00000186810 |
16.13014782 |
-0.760533823 |
0.42060437 |
0.001600649 |
0.032004023 |
CXCR3 |
X |
71615916 |
71618511 |
-1 |
C-X-C motif chemokine
receptor 3 [Source:HGNC Symbol;Acc:HGNC:4540] |
ENSG00000162994 |
106.7659397 |
0.599533277 |
0.31295594 |
0.001676714 |
0.032793418 |
CLHC1 |
2 |
55172547 |
55232563 |
-1 |
clathrin heavy chain linker domain containing 1
[Source:HGNC Symbol;Acc:HGNC:26453] |
ENSG00000126705 |
18.9367744 |
-0.618899656 |
0.363319778 |
0.002009731 |
0.036302645 |
AHDC1 |
1 |
27534035 |
27604431 |
-1 |
AT-hook DNA binding
motif containing 1 [Source:HGNC Symbol;Acc:HGNC:25230] |
ENSG00000173801 |
45.36381801 |
-0.647375887 |
0.38335118 |
0.002274335 |
0.03894437 |
JUP |
17 |
41754604 |
41786931 |
-1 |
junction plakoglobin [Source:HGNC
Symbol;Acc:HGNC:6207] |
ENSG00000167880 |
46.64030812 |
0.585889729 |
0.35022895 |
0.002479375 |
0.040566349 |
EVPL |
17 |
76004502 |
76027306 |
-1 |
envoplakin
[Source:HGNC Symbol;Acc:HGNC:3503] |
ENSG00000164821 |
76.70654053 |
0.904837071 |
0.622826849 |
0.002701688 |
0.042628392 |
DEFA4 |
8 |
6935820 |
6938306 |
-1 |
defensin alpha 4 [Source:HGNC Symbol;Acc:HGNC:2763] |
ENSG00000185829 |
46.14045535 |
-0.605003553 |
0.43718169 |
0.003602315 |
0.048973294 |
ARL17A |
17 |
46499780 |
46579695 |
-1 |
ADP ribosylation
factor like GTPase 17A [Source:HGNC Symbol;Acc:HGNC:24096] |
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